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peresay/vdjbase_pipeline:574ac4f19c3ca04c583dfd29e2ced9ed81cff480

Manifest digest

sha256:a276fdb4fccb3159a4af4c117c93e2c5f7df61479caa45e1f32dccfdd6a0fd96

OS/ARCH

linux/amd64

Compressed size

1.67 GB

Last pushed

over 4 years by peresay

Type

Image

Manifest digest

sha256:a276fdb4fccb3159a4af4c117c93e2c5f7df61479caa45e1f32dccfdd6a0fd96

Image Layers

Image Layers

1LABEL maintainer=Clement Verna <[email protected]>0 B
2ENV DISTTAG=f33container FGC=f33 FBR=f330 B
3ADD file ... in / 59.06 MB
4CMD ["/bin/bash"]0 B
5LABEL maintainer=Jason Anthony Vander Heiden0 B
6VOLUME [/data]0 B
7VOLUME [/scratch]0 B
8VOLUME [/software]0 B
9VOLUME [/oasis]0 B
10COPY tools/versions.py /usr/local/bin/versions # buildkit3.04 KB
11COPY tools/builds.py /usr/local/bin/builds # buildkit1.42 KB
12COPY tools/pipelines.py /usr/local/bin/pipelines # buildkit1.26 KB
13COPY tools/rinstall.R /usr/local/bin/rinstall # buildkit676 B
14RUN /bin/sh -c (cd /etc/yum.repos.d;1000 B
15RUN /bin/sh -c dnf -y672.54 MB
16ENV LD_LIBRARY_PATH=/usr/lib64/R/lib:/usr/lib64/atlas0 B
17ARG R_REPO=http://lib.stat.cmu.edu/R/CRAN/0 B
18ARG R_DEPS=c('Rcpp', 0 B
19ARG R_BIOC_DEPS=c('Biostrings', 0 B
20RUN |3 R_REPO=http://lib.stat.cmu.edu/R/CRAN/ R_DEPS=c('Rcpp', 143.16 MB
21LABEL maintainer=Jason Anthony Vander Heiden0 B
22COPY Version.yaml /Version.yaml # buildkit326 B
23COPY Pipeline.yaml /Pipeline.yaml # buildkit407 B
24RUN /bin/sh -c builds write134 B
25RUN /bin/sh -c PACKAGE="immcantation" 26.95 KB
26RUN /bin/sh -c MUSCLE=$(versions get578.74 KB
27RUN /bin/sh -c VSEARCH=$(versions get650.75 KB
28RUN /bin/sh -c CDHIT=$(versions get432.08 KB
29RUN /bin/sh -c BLAST=$(versions get239.38 MB
30RUN /bin/sh -c IGBLAST=$(versions get52.68 MB
31RUN /bin/sh -c PHYLIP=$(versions get4.32 MB
32RUN /bin/sh -c wget -q5.25 MB
33RUN /bin/sh -c AIRR_PY=$(versions get10.69 MB
34RUN /bin/sh -c PACKAGE="presto" 127.48 KB
35RUN /bin/sh -c PACKAGE="changeo" 176.85 KB
36RUN /bin/sh -c PACKAGE="alakazam" 24.05 MB
37RUN /bin/sh -c PACKAGE="shazam" 3.75 MB
38RUN /bin/sh -c PACKAGE="tigger" 5.42 MB
39RUN /bin/sh -c PACKAGE="scoper" 3.6 MB
40RUN /bin/sh -c PACKAGE="dowser" 5.67 MB
41RUN /bin/sh -c PACKAGE="prestor" 1.74 MB
42RUN /bin/sh -c IGPHYML=$(versions get7.12 MB
43RUN /bin/sh -c PACKAGE="rdi" 1.39 MB
44RUN /bin/sh -c RABHIT=$(versions get18.25 MB
45RUN /bin/sh -c fetch_imgtdb.sh -o1.1 MB
46ENV PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/local/share/igphyml/src0 B
47RUN /bin/sh -c useradd magus2.61 KB
48CMD ["/bin/sh" "-c" "echo -e0 B
49COPY file:23010f55e782c6cd74b6fe2267fcbb87a9562e605bc0b4dba2718cb35d533241 in /pipeline_add.yaml 385 B
50COPY file:08178ff8aaa06d2f7c757842301e4df646f9609a20d628ec0a394537f7114c80 in /Version.yaml 354 B
51COPY file:4edac0ecd6727266e8f5241e83c4548b493c5aae8fb45622b46a1a9e4c11dbac in /usr/local/bin/pipelines 1.28 KB
52COPY file:5750e77cd273c2574866c8e4c107524d4e084960d6e71921617b00fe725464ff in /usr/local/bin/builds 1.43 KB
53COPY file:1bd5fb6179da410b862d9609c0330396f26479749bf3ce6a98929ac5e63211f4 in /usr/local/bin/versions 3.08 KB
54/bin/sh -c builds write -n365 B
55/bin/sh -c dnf -y update332.43 MB
56ARG R_REPO=http://lib.stat.cmu.edu/R/CRAN/0 B
57ARG R_DEPS=c('Rcpp', 0 B
58ARG R_BIOC_DEPS=c('Biostrings', 0 B
59|3 R_BIOC_DEPS=c('Biostrings', 25.53 MB
60|3 R_BIOC_DEPS=c('Biostrings', 79.63 MB
61|3 R_BIOC_DEPS=c('Biostrings', 8.43 KB
62|3 R_BIOC_DEPS=c('Biostrings', 6.5 MB
63|3 R_BIOC_DEPS=c('Biostrings', 417.49 KB
64|3 R_BIOC_DEPS=c('Biostrings', 19.21 KB
65ENV IGDATA=/usr/local/share/igblast0 B
66CMD ["/bin/sh" "-c" "echo0 B

Command

 LABEL maintainer=Clement Verna <[email protected]>