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ctomlins/pacbio_sv_pipeline:latest

Manifest digest

sha256:7d16be2c1ea7a93f59bb0def3f79e2c985bc993d9c567d3aa54be61a170050b0

OS/ARCH

linux/amd64

Compressed size

609.72 MB

Last pushed

about 2 years by ctomlins

Type

Image

Manifest digest

sha256:7d16be2c1ea7a93f59bb0def3f79e2c985bc993d9c567d3aa54be61a170050b0

Image Layers

Image Layers

1ARG RELEASE0 B
2ARG LAUNCHPAD_BUILD_ARCH0 B
3LABEL org.opencontainers.image.ref.name=ubuntu0 B
4LABEL org.opencontainers.image.version=20.040 B
5ADD file ... in / 26.24 MB
6CMD ["/bin/bash"]0 B
7ENV DEBIAN_FRONTEND=noninteractive0 B
8RUN /bin/sh -c apt-get update163.81 MB
9RUN /bin/sh -c wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh206.95 MB
10ENV PATH=/opt/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
11RUN /bin/sh -c conda config205.23 MB
12RUN /bin/sh -c echo "source1.53 KB
13ENV PATH=/opt/conda/envs/bio_env/bin:/opt/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
14RUN /bin/sh -c git clone7.48 MB
15COPY svpack.py /usr/local/bin/svpack.py # buildkit5.81 KB
16RUN /bin/sh -c chmod +x5.81 KB
17COPY pacbio_align_and_call_svs.sh /usr/local/bin/pacbio_align_and_call_svs.sh # buildkit2.07 KB
18RUN /bin/sh -c chmod +x2.06 KB
19ENV LD_LIBRARY_PATH=/usr/local/lib:0 B
20ENV PATH=/usr/local/bin:/opt/conda/envs/bio_env/bin:/opt/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
21WORKDIR /data94 B
22CMD ["bash" "-c" "source activate0 B
23/bin/bash1.39 KB

Command

 ARG RELEASE